The department of Pharmacy can be considered as the milestone of JSTU (Jessore Science & Technology University). It began its journey in 2010 with the first batch of B. Pharm. At present it has 62 students and the second batch has been admitted. It offers a 4-year Bachelor of Pharmacy (B. Pharm) program. It functions under the Faculty of Biological Science & Technology. Mohammad Jashim Uddin is the current chairman of this department.